H071sl
BioSample: SAMN50628535 · Study: PRJNA1306337 · Body site: Saliva sample
Interactive report · NCBI SRA · ENA
Relative abundance is normalized among reported taxa. No reported taxa does not establish absence of organisms.
| Species | Genus | Phylum | Abundance |
|---|---|---|---|
| Haemophilus parainfluenzae | Haemophilus | Pseudomonadota | 16.28145% |
| Porphyromonas pasteri | Porphyromonas | Bacteroidota | 10.97065% |
| Veillonella parvula | Veillonella | Bacillota | 9.86347% |
| Neisseria subflava | Neisseria | Pseudomonadota | 6.91205% |
| Fusobacterium periodonticum | Fusobacterium | Fusobacteriota | 6.68603% |
| Veillonella dispar | Veillonella | Bacillota | 6.56529% |
| Prevotella melaninogenica | Prevotella | Bacteroidota | 5.21908% |
| Haemophilus haemolyticus | Haemophilus | Pseudomonadota | 4.00449% |
| Fusobacterium nucleatum | Fusobacterium | Fusobacteriota | 3.31323% |
| Streptococcus mitis | Streptococcus | Bacillota | 2.56750% |
| Capnocytophaga gingivalis | Capnocytophaga | Bacteroidota | 1.99808% |
| Prevotella nanceiensis | Prevotella | Bacteroidota | 1.98645% |
| Prevotella pallens | Prevotella | Bacteroidota | 1.69630% |
| Streptococcus oralis | Streptococcus | Bacillota | 1.31845% |
| Campylobacter concisus | Campylobacter | Pseudomonadota | 1.30852% |
| Neisseria flavescens | Neisseria | Pseudomonadota | 1.13940% |
| Neisseria meningitidis | Neisseria | Pseudomonadota | 1.04533% |
| Leptotrichia hongkongensis | Leptotrichia | Fusobacteriota | 0.98380% |
| Haemophilus influenzae | Haemophilus | Pseudomonadota | 0.96556% |
| Veillonella infantium | Veillonella | Bacillota | 0.93635% |
| Streptococcus pneumoniae | Streptococcus | Bacillota | 0.91148% |
| Porphyromonas gingivalis | Porphyromonas | Bacteroidota | 0.87574% |
| Prevotella salivae | Prevotella | Bacteroidota | 0.84909% |
| Leptotrichia trevisanii | Leptotrichia | Fusobacteriota | 0.75280% |
| Neisseria gonorrhoeae | Neisseria | Pseudomonadota | 0.70870% |
| Prevotella veroralis | Prevotella | Bacteroidota | 0.58959% |
| Prevotella shahii | Prevotella | Bacteroidota | 0.57813% |
| Haemophilus parahaemolyticus | Haemophilus | Pseudomonadota | 0.51648% |
| Prevotella oris | Prevotella | Bacteroidota | 0.49024% |
| Gemella haemolysans | Gemella | Bacillota | 0.46148% |
| Prevotella jejuni | Prevotella | Bacteroidota | 0.42632% |
| Capnocytophaga leadbetteri | Capnocytophaga | Bacteroidota | 0.36513% |
| Haemophilus aegyptius | Haemophilus | Pseudomonadota | 0.36295% |
| Prevotella nigrescens | Prevotella | Bacteroidota | 0.34992% |
| Prevotella oulorum | Prevotella | Bacteroidota | 0.31287% |
| Veillonella rodentium | Veillonella | Bacillota | 0.30439% |
| Porphyromonas catoniae | Porphyromonas | Bacteroidota | 0.25810% |
| Selenomonas infelix | Selenomonas | Bacillota | 0.25326% |
| Porphyromonas gingivicanis | Porphyromonas | Bacteroidota | 0.24849% |
| Leptotrichia wadei | Leptotrichia | Fusobacteriota | 0.24526% |
| Lachnoanaerobaculum umeaense | Lachnoanaerobaculum | Bacillota | 0.24470% |
| Lachnoanaerobaculum saburreum | Lachnoanaerobaculum | Bacillota | 0.24345% |
| Lachnoanaerobaculum orale | Lachnoanaerobaculum | Bacillota | 0.23704% |
| Megasphaera paucivorans | Megasphaera | Bacillota | 0.22821% |
| Prevotella ruminicola | Prevotella | Bacteroidota | 0.22272% |
| Neisseria cinerea | Neisseria | Pseudomonadota | 0.20814% |
| Streptococcus salivarius | Streptococcus | Bacillota | 0.20284% |
| Fusobacterium simiae | Fusobacterium | Fusobacteriota | 0.19964% |
| Capnocytophaga sputigena | Capnocytophaga | Bacteroidota | 0.19778% |
| Pseudoleptotrichia goodfellowii | Pseudoleptotrichia | Fusobacteriota | 0.18356% |
| Fusobacterium hwasookii | Fusobacterium | Fusobacteriota | 0.18196% |
| Prevotella intermedia | Prevotella | Bacteroidota | 0.17747% |
| Porphyromonas macacae | Porphyromonas | Bacteroidota | 0.17691% |
| Porphyromonas levii | Porphyromonas | Bacteroidota | 0.17295% |
| Fusobacterium russii | Fusobacterium | Fusobacteriota | 0.15788% |
| Prevotella bivia | Prevotella | Bacteroidota | 0.15532% |
| Prevotella brevis | Prevotella | Bacteroidota | 0.14999% |
| Campylobacter hyointestinalis | Campylobacter | Pseudomonadota | 0.14707% |
| Streptococcus downei | Streptococcus | Bacillota | 0.14705% |
| Fusobacterium perfoetens | Fusobacterium | Fusobacteriota | 0.14131% |
| Veillonella atypica | Veillonella | Bacillota | 0.13597% |
| Prevotella corporis | Prevotella | Bacteroidota | 0.13391% |
| Campylobacter gracilis | Campylobacter | Pseudomonadota | 0.11650% |
| Neisseria elongata | Neisseria | Pseudomonadota | 0.11367% |
| Porphyromonas loveana | Porphyromonas | Bacteroidota | 0.10206% |
65 of 65 reported species have an eligible reference. MAFFT alignment and FastTree GTR+CAT tree, pruned to this sample. This is not a phylogeny inferred from sample reads or ASVs. Root placement is arbitrary; branch lengths are substitutions per site.
Files contain the original full run. Downloads are hosted by ENA.
| File | Type / bytes | MD5 |
|---|---|---|
| SRR34998382_1.fastq.gz | FASTQ / 32162355 | 676ab96d28b5698df33a3e3c0e36036c |
| marker | 16S |
|---|---|
| pipeline | Archaions v18.8 |
| read_sampling | First available reads, not random subsampling |
| input_sha256 | 5d2190b4a0a0a9ce94d42d8ab9d76d71ce6146fb539581b7edaf9dfcdabdc7a6 |
| median_read_length | 1488.0 |
| reads_in_length_window | 21168 |
| length_window_bp | [1200, 2000] |
| quality_scores | Unavailable in fetched FASTA; no measured quality filtering |
| classifier_stats | {"marker": "16s", "pipeline": "v18.8", "gpu": "RTX-PRO-6000", "input_path": "volume-fastq-gz", "reads_in": 23094, "reads_skipped": 3190, "elapsed_seconds": 2.2008503179999934, "reads_submitted": 23094, "reads_after_filter": 23094, "adapter_scan": {"sampled": 200, "matched": 41, "fraction": 0.205, "adapters_found": {"BC_FLANK": 15, "27F": 26}, "should_trim": true}, "porechop_ran": false, "porechop_reason": "fast-path: no adapter trimming required"} |
All retrieved values are included. Blank source values are displayed as “Not reported”. Expand the sections below to inspect the full record.
| run_accession | SRR34998382 |
|---|---|
| age | Not reported |
| aligned | Not reported |
| altitude | Not reported |
| assembly_quality | Not reported |
| assembly_software | Not reported |
| bam_aspera | Not reported |
| bam_bytes | Not reported |
| bam_file_role | Not reported |
| bam_ftp | Not reported |
| bam_galaxy | Not reported |
| bam_md5 | Not reported |
| base_count | 33973410 |
| binning_software | Not reported |
| bio_material | Not reported |
| bisulfite_protocol | Not reported |
| broad_scale_environmental_context | Not reported |
| broker_name | Not reported |
| cage_protocol | Not reported |
| cell_line | Not reported |
| cell_type | Not reported |
| center_name | SUB15541410 |
| checklist | Not reported |
| chip_ab_provider | Not reported |
| chip_protocol | Not reported |
| chip_target | Not reported |
| collected_by | Not reported |
| collection_date | 2021-05 |
| collection_date_end | 2021-05-31 |
| collection_date_start | 2021-04-30 |
| completeness_score | Not reported |
| contamination_score | Not reported |
| control_experiment | Not reported |
| country | Russia: Moscow |
| cultivar | Not reported |
| culture_collection | Not reported |
| datahub | dcc_metagenome |
| depth | Not reported |
| description | MinION sequencing: 16s rRNA Seq Human Oral Metagenome |
| dev_stage | Not reported |
| disease | Not reported |
| dnase_protocol | Not reported |
| ecotype | Not reported |
| elevation | Not reported |
| environment_biome | Not reported |
| environment_feature | Not reported |
| environment_material | Not reported |
| environmental_medium | Not reported |
| environmental_sample | Not reported |
| experiment_accession | SRX30116997 |
| experiment_alias | H071sl |
| experiment_target | Not reported |
| experiment_title | MinION sequencing: 16s rRNA Seq Human Oral Metagenome |
| experimental_factor | Not reported |
| experimental_protocol | Not reported |
| extraction_protocol | Not reported |
| faang_library_selection | Not reported |
| fastq_aspera | fasp.sra.ebi.ac.uk:/vol1/fastq/SRR349/082/SRR34998382/SRR34998382_1.fastq.gz |
| fastq_bytes | 32162355 |
| fastq_file_role | GENERATED_FILE |
| fastq_ftp | ftp.sra.ebi.ac.uk/vol1/fastq/SRR349/082/SRR34998382/SRR34998382_1.fastq.gz |
| fastq_galaxy | ftp.sra.ebi.ac.uk/vol1/fastq/SRR349/082/SRR34998382/SRR34998382_1.fastq.gz |
| fastq_md5 | 676ab96d28b5698df33a3e3c0e36036c |
| file_location | Not reported |
| first_created | 2025-11-16 |
| first_public | 2025-11-16 |
| germline | Not reported |
| hi_c_protocol | Not reported |
| host | Homo sapiens |
| host_body_site | Not reported |
| host_genotype | Not reported |
| host_gravidity | Not reported |
| host_growth_conditions | Not reported |
| host_phenotype | Not reported |
| host_scientific_name | Homo sapiens |
| host_sex | Not reported |
| host_status | Not reported |
| host_tax_id | 9606 |
| identified_by | Not reported |
| instrument_model | MinION |
| instrument_platform | OXFORD_NANOPORE |
| investigation_type | Not reported |
| isolate | Not reported |
| isolation_source | Saliva sample |
| last_updated | 2025-11-16 |
| lat | 55.44 |
| library_construction_protocol | Not reported |
| library_gen_protocol | Not reported |
| library_layout | SINGLE |
| library_max_fragment_size | Not reported |
| library_min_fragment_size | Not reported |
| library_name | H071sl |
| library_pcr_isolation_protocol | Not reported |
| library_prep_date | Not reported |
| library_prep_date_format | Not reported |
| library_prep_latitude | Not reported |
| library_prep_location | Not reported |
| library_prep_longitude | Not reported |
| library_selection | PCR |
| library_source | METAGENOMIC |
| library_strategy | OTHER |
| local_environmental_context | Not reported |
| location | 55.44 N 37.77 E |
| location_end | 55.44 N 37.77 E |
| location_start | 55.44 N 37.77 E |
| lon | 37.77 |
| marine_region | Not reported |
| mating_type | Not reported |
| ncbi_reporting_standard | Metagenome or environmental |
| nominal_length | Not reported |
| nominal_sdev | Not reported |
| pcr_isolation_protocol | Not reported |
| ph | Not reported |
| project_name | Not reported |
| protocol_label | Not reported |
| read_count | 23094 |
| read_strand | Not reported |
| restriction_enzyme | Not reported |
| restriction_enzyme_target_sequence | Not reported |
| restriction_site | Not reported |
| rna_integrity_num | Not reported |
| rna_prep_3_protocol | Not reported |
| rna_prep_5_protocol | Not reported |
| rna_purity_230_ratio | Not reported |
| rna_purity_280_ratio | Not reported |
| rt_prep_protocol | Not reported |
| run_alias | H071sl.fastq.gz |
| run_date | Not reported |
| salinity | Not reported |
| sample_accession | SAMN50628535 |
| sample_alias | H071sl.fastq.gz |
| sample_capture_status | Not reported |
| sample_collection | Not reported |
| sample_description | H071sl |
| sample_material | Not reported |
| sample_prep_interval | Not reported |
| sample_prep_interval_units | Not reported |
| sample_storage | Not reported |
| sample_storage_processing | Not reported |
| sample_title | H071sl |
| sampling_campaign | Not reported |
| sampling_platform | Not reported |
| sampling_site | Not reported |
| scientific_name | human oral metagenome |
| secondary_project | Not reported |
| secondary_sample_accession | SRS26180005 |
| secondary_study_accession | SRP609047 |
| sequencing_date | Not reported |
| sequencing_date_format | Not reported |
| sequencing_location | Not reported |
| sequencing_longitude | Not reported |
| sequencing_method | Not reported |
| sequencing_primer_catalog | Not reported |
| sequencing_primer_lot | Not reported |
| sequencing_primer_provider | Not reported |
| serotype | Not reported |
| serovar | Not reported |
| sex | Not reported |
| specimen_voucher | Not reported |
| sra_aspera | Not reported |
| sra_bytes | Not reported |
| sra_file_role | Not reported |
| sra_ftp | Not reported |
| sra_galaxy | Not reported |
| sra_md5 | Not reported |
| status | public |
| strain | Not reported |
| study_accession | PRJNA1306337 |
| study_alias | PRJNA1306337 |
| study_title | Gut and oral microbiota in patients with obesity and/or ischemic heart disease |
| sub_species | Not reported |
| sub_strain | Not reported |
| submission_accession | SRA2195986 |
| submission_tool | Not reported |
| submitted_aspera | Not reported |
| submitted_bytes | Not reported |
| submitted_file_role | Not reported |
| submitted_format | Not reported |
| submitted_ftp | Not reported |
| submitted_galaxy | Not reported |
| submitted_host_sex | Not reported |
| submitted_md5 | Not reported |
| submitted_read_type | Not reported |
| surveillance_target | Not reported |
| tag | env_geo;env_geo:terrestrial |
| target_gene | Not reported |
| tax_id | 447426 |
| tax_lineage | 1;2787823;12908;408169;410656;447426 |
| taxonomic_classification | Not reported |
| taxonomic_identity_marker | Not reported |
| temperature | Not reported |
| tissue_lib | Not reported |
| tissue_type | Not reported |
| transposase_protocol | Not reported |
| variety | Not reported |
| alias | H071sl.fastq.gz |
|---|---|
| title | H071sl |
| description | Not reported |
| collection_date | 2021-05 |
|---|---|
| INSDC secondary accession | SRS26180005 |
| NCBI submission package | Metagenome.environmental.1.0 |
| organism | human oral metagenome |
| host | Homo sapiens |
| geo_loc_name | Russia: Moscow |
| biosample_attributes | H071sl |
| lat_lon | 55.44 N 37.77 E |
| isolation_source | Saliva sample |
| BioSampleModel | Metagenome or environmental |
| ENA-FIRST-PUBLIC | 2025-11-15 |
| ENA-LAST-UPDATE | 2025-11-15 |
| run | SRR34998382 |
|---|---|
| sample | SAMN50628535 |
| study | PRJNA1306337 |
| title | H071sl |
| alias | H071sl.fastq.gz |
| site | Saliva sample |
| subject | Not reported |
| phenotype | Not reported |
| sex | Not reported |
| smoking | Not reported |
| periodontitis | Not reported |
| time_point | Not reported |
| negative_control | False |
| lab_model | False |
| state | complete |
| reads_input | 23094 |
| species_reported | 65 |
| human_primary | True |
Model-based taxonomy; research use. This report does not provide a diagnosis or a validated health score.