H088
BioSample: SAMN50628572 · Study: PRJNA1306337 · Body site: Saliva sample
Interactive report · NCBI SRA · ENA
Relative abundance is normalized among reported taxa. No reported taxa does not establish absence of organisms.
| Species | Genus | Phylum | Abundance |
|---|---|---|---|
| Streptococcus mitis | Streptococcus | Bacillota | 27.82598% |
| Haemophilus haemolyticus | Haemophilus | Pseudomonadota | 14.17838% |
| Haemophilus parainfluenzae | Haemophilus | Pseudomonadota | 12.45833% |
| Veillonella ratti | Veillonella | Bacillota | 8.42266% |
| Streptococcus pneumoniae | Streptococcus | Bacillota | 7.01169% |
| Haemophilus influenzae | Haemophilus | Pseudomonadota | 3.01285% |
| Gemella haemolysans | Gemella | Bacillota | 2.96631% |
| Neisseria cinerea | Neisseria | Pseudomonadota | 2.75715% |
| Granulicatella elegans | Granulicatella | Bacillota | 2.72542% |
| Streptococcus salivarius | Streptococcus | Bacillota | 2.58025% |
| Veillonella parvula | Veillonella | Bacillota | 1.81421% |
| Porphyromonas pasteri | Porphyromonas | Bacteroidota | 1.77896% |
| Streptococcus oralis | Streptococcus | Bacillota | 1.32218% |
| Streptococcus downei | Streptococcus | Bacillota | 1.10214% |
| Neisseria meningitidis | Neisseria | Pseudomonadota | 1.03114% |
| Campylobacter concisus | Campylobacter | Pseudomonadota | 0.93639% |
| Veillonella infantium | Veillonella | Bacillota | 0.81847% |
| Fusobacterium nucleatum | Fusobacterium | Fusobacteriota | 0.71076% |
| Haemophilus aegyptius | Haemophilus | Pseudomonadota | 0.67719% |
| Veillonella dispar | Veillonella | Bacillota | 0.56073% |
| Neisseria flavescens | Neisseria | Pseudomonadota | 0.54657% |
| Granulicatella adiacens | Granulicatella | Bacillota | 0.49972% |
| Neisseria gonorrhoeae | Neisseria | Pseudomonadota | 0.44356% |
| Streptococcus vestibularis | Streptococcus | Bacillota | 0.43098% |
| Veillonella criceti | Veillonella | Bacillota | 0.34486% |
| Veillonella rodentium | Veillonella | Bacillota | 0.30694% |
| Leptotrichia wadei | Leptotrichia | Fusobacteriota | 0.25331% |
| Gemella palaticanis | Gemella | Bacillota | 0.23418% |
| Neisseria subflava | Neisseria | Pseudomonadota | 0.21337% |
| Streptococcus pseudopneumoniae | Streptococcus | Bacillota | 0.21195% |
| Streptococcus sanguinis | Streptococcus | Bacillota | 0.21076% |
| Streptococcus thermophilus | Streptococcus | Bacillota | 0.16391% |
| Stenotrophomonas maltophilia | Stenotrophomonas | Pseudomonadota | 0.14790% |
| Haemophilus parahaemolyticus | Haemophilus | Pseudomonadota | 0.14601% |
| Haemophilus haemoglobinophilus | Haemophilus | Pseudomonadota | 0.13889% |
| Leptotrichia hongkongensis | Leptotrichia | Fusobacteriota | 0.13292% |
| Streptococcus cristatus | Streptococcus | Bacillota | 0.12026% |
| Streptococcus dysgalactiae | Streptococcus | Bacillota | 0.11917% |
| Streptococcus pyogenes | Streptococcus | Bacillota | 0.11668% |
| Fusobacterium periodonticum | Fusobacterium | Fusobacteriota | 0.11093% |
| Campylobacter hyointestinalis | Campylobacter | Pseudomonadota | 0.10716% |
| Streptococcus parasanguinis | Streptococcus | Bacillota | 0.10693% |
| Porphyromonas gingivalis | Porphyromonas | Bacteroidota | 0.10682% |
| Haemophilus paraphrohaemolyticus | Haemophilus | Pseudomonadota | 0.09501% |
44 of 44 reported species have an eligible reference. MAFFT alignment and FastTree GTR+CAT tree, pruned to this sample. This is not a phylogeny inferred from sample reads or ASVs. Root placement is arbitrary; branch lengths are substitutions per site.
Files contain the original full run. Downloads are hosted by ENA.
| File | Type / bytes | MD5 |
|---|---|---|
| SRR34998309_1.fastq.gz | FASTQ / 42494838 | 538395db72f36870fdef8983a0bcffd2 |
| marker | 16S |
|---|---|
| pipeline | Archaions v18.8 |
| read_sampling | First available reads, not random subsampling |
| input_sha256 | f172de3d40c1a91216d35ec2de806025f5581422dc20462ba96e50e13b615775 |
| median_read_length | 1494.0 |
| reads_in_length_window | 26752 |
| length_window_bp | [1200, 2000] |
| quality_scores | Unavailable in fetched FASTA; no measured quality filtering |
| classifier_stats | {"marker": "16s", "pipeline": "v18.8", "gpu": "RTX-PRO-6000", "input_path": "volume-fastq-gz", "reads_in": 30000, "reads_skipped": 5527, "elapsed_seconds": 2.6795137399999476, "reads_submitted": 30000, "reads_after_filter": 30000, "adapter_scan": {"sampled": 200, "matched": 45, "fraction": 0.225, "adapters_found": {"27F": 25, "BC_FLANK": 20}, "should_trim": true}, "porechop_ran": false, "porechop_reason": "fast-path: no adapter trimming required"} |
All retrieved values are included. Blank source values are displayed as “Not reported”. Expand the sections below to inspect the full record.
| run_accession | SRR34998309 |
|---|---|
| age | Not reported |
| aligned | Not reported |
| altitude | Not reported |
| assembly_quality | Not reported |
| assembly_software | Not reported |
| bam_aspera | Not reported |
| bam_bytes | Not reported |
| bam_file_role | Not reported |
| bam_ftp | Not reported |
| bam_galaxy | Not reported |
| bam_md5 | Not reported |
| base_count | 46329126 |
| binning_software | Not reported |
| bio_material | Not reported |
| bisulfite_protocol | Not reported |
| broad_scale_environmental_context | Not reported |
| broker_name | Not reported |
| cage_protocol | Not reported |
| cell_line | Not reported |
| cell_type | Not reported |
| center_name | SUB15541410 |
| checklist | Not reported |
| chip_ab_provider | Not reported |
| chip_protocol | Not reported |
| chip_target | Not reported |
| collected_by | Not reported |
| collection_date | 2021-05 |
| collection_date_end | 2021-05-31 |
| collection_date_start | 2021-04-30 |
| completeness_score | Not reported |
| contamination_score | Not reported |
| control_experiment | Not reported |
| country | Russia: Moscow |
| cultivar | Not reported |
| culture_collection | Not reported |
| datahub | dcc_metagenome |
| depth | Not reported |
| description | MinION sequencing: 16s rRNA Seq Human Oral Metagenome |
| dev_stage | Not reported |
| disease | Not reported |
| dnase_protocol | Not reported |
| ecotype | Not reported |
| elevation | Not reported |
| environment_biome | Not reported |
| environment_feature | Not reported |
| environment_material | Not reported |
| environmental_medium | Not reported |
| environmental_sample | Not reported |
| experiment_accession | SRX30116896 |
| experiment_alias | H088 |
| experiment_target | Not reported |
| experiment_title | MinION sequencing: 16s rRNA Seq Human Oral Metagenome |
| experimental_factor | Not reported |
| experimental_protocol | Not reported |
| extraction_protocol | Not reported |
| faang_library_selection | Not reported |
| fastq_aspera | fasp.sra.ebi.ac.uk:/vol1/fastq/SRR349/009/SRR34998309/SRR34998309_1.fastq.gz |
| fastq_bytes | 42494838 |
| fastq_file_role | GENERATED_FILE |
| fastq_ftp | ftp.sra.ebi.ac.uk/vol1/fastq/SRR349/009/SRR34998309/SRR34998309_1.fastq.gz |
| fastq_galaxy | ftp.sra.ebi.ac.uk/vol1/fastq/SRR349/009/SRR34998309/SRR34998309_1.fastq.gz |
| fastq_md5 | 538395db72f36870fdef8983a0bcffd2 |
| file_location | Not reported |
| first_created | 2025-11-16 |
| first_public | 2025-11-16 |
| germline | Not reported |
| hi_c_protocol | Not reported |
| host | Homo sapiens |
| host_body_site | Not reported |
| host_genotype | Not reported |
| host_gravidity | Not reported |
| host_growth_conditions | Not reported |
| host_phenotype | Not reported |
| host_scientific_name | Homo sapiens |
| host_sex | Not reported |
| host_status | Not reported |
| host_tax_id | 9606 |
| identified_by | Not reported |
| instrument_model | MinION |
| instrument_platform | OXFORD_NANOPORE |
| investigation_type | Not reported |
| isolate | Not reported |
| isolation_source | Saliva sample |
| last_updated | 2025-11-16 |
| lat | 55.44 |
| library_construction_protocol | Not reported |
| library_gen_protocol | Not reported |
| library_layout | SINGLE |
| library_max_fragment_size | Not reported |
| library_min_fragment_size | Not reported |
| library_name | H088 |
| library_pcr_isolation_protocol | Not reported |
| library_prep_date | Not reported |
| library_prep_date_format | Not reported |
| library_prep_latitude | Not reported |
| library_prep_location | Not reported |
| library_prep_longitude | Not reported |
| library_selection | PCR |
| library_source | METAGENOMIC |
| library_strategy | OTHER |
| local_environmental_context | Not reported |
| location | 55.44 N 37.77 E |
| location_end | 55.44 N 37.77 E |
| location_start | 55.44 N 37.77 E |
| lon | 37.77 |
| marine_region | Not reported |
| mating_type | Not reported |
| ncbi_reporting_standard | Metagenome or environmental |
| nominal_length | Not reported |
| nominal_sdev | Not reported |
| pcr_isolation_protocol | Not reported |
| ph | Not reported |
| project_name | Not reported |
| protocol_label | Not reported |
| read_count | 31606 |
| read_strand | Not reported |
| restriction_enzyme | Not reported |
| restriction_enzyme_target_sequence | Not reported |
| restriction_site | Not reported |
| rna_integrity_num | Not reported |
| rna_prep_3_protocol | Not reported |
| rna_prep_5_protocol | Not reported |
| rna_purity_230_ratio | Not reported |
| rna_purity_280_ratio | Not reported |
| rt_prep_protocol | Not reported |
| run_alias | H088.fastq.gz |
| run_date | Not reported |
| salinity | Not reported |
| sample_accession | SAMN50628572 |
| sample_alias | H088.fastq.gz |
| sample_capture_status | Not reported |
| sample_collection | Not reported |
| sample_description | H088 |
| sample_material | Not reported |
| sample_prep_interval | Not reported |
| sample_prep_interval_units | Not reported |
| sample_storage | Not reported |
| sample_storage_processing | Not reported |
| sample_title | H088 |
| sampling_campaign | Not reported |
| sampling_platform | Not reported |
| sampling_site | Not reported |
| scientific_name | human oral metagenome |
| secondary_project | Not reported |
| secondary_sample_accession | SRS26179904 |
| secondary_study_accession | SRP609047 |
| sequencing_date | Not reported |
| sequencing_date_format | Not reported |
| sequencing_location | Not reported |
| sequencing_longitude | Not reported |
| sequencing_method | Not reported |
| sequencing_primer_catalog | Not reported |
| sequencing_primer_lot | Not reported |
| sequencing_primer_provider | Not reported |
| serotype | Not reported |
| serovar | Not reported |
| sex | Not reported |
| specimen_voucher | Not reported |
| sra_aspera | Not reported |
| sra_bytes | Not reported |
| sra_file_role | Not reported |
| sra_ftp | Not reported |
| sra_galaxy | Not reported |
| sra_md5 | Not reported |
| status | public |
| strain | Not reported |
| study_accession | PRJNA1306337 |
| study_alias | PRJNA1306337 |
| study_title | Gut and oral microbiota in patients with obesity and/or ischemic heart disease |
| sub_species | Not reported |
| sub_strain | Not reported |
| submission_accession | SRA2195986 |
| submission_tool | Not reported |
| submitted_aspera | Not reported |
| submitted_bytes | Not reported |
| submitted_file_role | Not reported |
| submitted_format | Not reported |
| submitted_ftp | Not reported |
| submitted_galaxy | Not reported |
| submitted_host_sex | Not reported |
| submitted_md5 | Not reported |
| submitted_read_type | Not reported |
| surveillance_target | Not reported |
| tag | env_geo;env_geo:terrestrial |
| target_gene | Not reported |
| tax_id | 447426 |
| tax_lineage | 1;2787823;12908;408169;410656;447426 |
| taxonomic_classification | Not reported |
| taxonomic_identity_marker | Not reported |
| temperature | Not reported |
| tissue_lib | Not reported |
| tissue_type | Not reported |
| transposase_protocol | Not reported |
| variety | Not reported |
| alias | H088.fastq.gz |
|---|---|
| title | H088 |
| description | Not reported |
| collection_date | 2021-05 |
|---|---|
| INSDC secondary accession | SRS26179904 |
| NCBI submission package | Metagenome.environmental.1.0 |
| organism | human oral metagenome |
| host | Homo sapiens |
| geo_loc_name | Russia: Moscow |
| biosample_attributes | H088 |
| lat_lon | 55.44 N 37.77 E |
| isolation_source | Saliva sample |
| BioSampleModel | Metagenome or environmental |
| ENA-FIRST-PUBLIC | 2025-11-15 |
| ENA-LAST-UPDATE | 2025-11-15 |
| run | SRR34998309 |
|---|---|
| sample | SAMN50628572 |
| study | PRJNA1306337 |
| title | H088 |
| alias | H088.fastq.gz |
| site | Saliva sample |
| subject | Not reported |
| phenotype | Not reported |
| sex | Not reported |
| smoking | Not reported |
| periodontitis | Not reported |
| time_point | Not reported |
| negative_control | False |
| lab_model | False |
| state | complete |
| reads_input | 30000 |
| species_reported | 44 |
| human_primary | True |
Model-based taxonomy; research use. This report does not provide a diagnosis or a validated health score.